PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016434968.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 1099aa    MW: 122827 Da    PI: 8.2949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016434968.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.4e-08540340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++e+  ++++a +++G++ Wk++a+ +   Rt +++
   XP_016434968.1  5 EWSEEDLTRFYQAYRKYGKD-WKKVAAAVK-PRTSEMV 40
                     7*****************99.******998.7887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.689154IPR017884SANT domain
SMARTSM007171.7E-4250IPR001005SANT/Myb domain
SuperFamilySSF466895.01E-9450IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-4540IPR009057Homeodomain-like
PfamPF002491.6E-6541IPR001005SANT/Myb domain
CDDcd001676.94E-6540No hitNo description
PfamPF065841.7E-33593693IPR033471DIRP domain
SMARTSM011352.5E-58593694IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1099 aa     Download sequence    Send to blast
MLGPEWSEED LTRFYQAYRK YGKDWKKVAA AVKPRTSEMV EALYMMNRAY LSLPEGTASV  60
VGLIAMMTDH YCNLAASDSE QESNEDAGTS RKPQKRARGK VQPNISKASE MTSPTLAASH  120
GCLTLLKKKR SGGSRPRAVG KRTPRFPVSF SCGNPKGEKY FSPSRQSLKL QADDTDDDVK  180
IALVLTEASQ RGGSPQVSQT PNRRTDSAMS SPVETAERKR VKIGMGNAKL LSNEVDEEEG  240
SMEADTGELL RYKTDLVETG TFGRTAQKGR RPYGKKLEID DSGANHFDDI KEACSGTEGG  300
QILGVVRGKL EMEATYEKNS RTSLQGPRKR SKKVLFSRDE SSAFDALQTL ADMSLMMPTA  360
ENEDESMIQF NDEIDDHVDE SGSLEAVPAN RQRDKRGSGG VRSRWSQPLS KFEVASTTKS  420
KHGKVTSTDV SAVPETKQAR RAHKAMSSKA RKTEGHVNNN NVTGSEEAEA KEASKKSTNK  480
GKRSYRSASP KLIKDQEPSS CADPRTERSD SAQSAAEIPV ANQVNLPTKV RSRRKMDLKK  540
PQRQKDLKIP DKSLDDTSAS FTALHDRAFS LKEKISNCLS NHQVRRWCTY EWFYSAIDYP  600
WFAKRDFVEY LNHVGLGHVP RLTRVEWGVI RSSLGKPRRF SEQFLNEEKE KLNQYRESVR  660
THYTELREGT REGLPTDLAR PLSVGQRVIA IHPKTREIHD GSVLTVDRSR CRVQFDRPEL  720
GVEFVMDIDC MPLNPFENMP TLLTRRADAV DKFFESFNEL KVNARANEYM KFPACDNMEN  780
GNVFSHFSPP SHPISDLLKQ TKVASAEVDM QSRSGVMETA TYQSMAYSKS SGVAQIQAKE  840
ADVQALAELA RALDKKEAVV SELRRMNDDV LENQKSNDCS LKDSEPFKKQ YAAMLIQLNE  900
VNEEVSCALY RLRQRNTYQG SIPLAFPRPV PNFADPSTLS TFDRCTSQPQ ESGFLVNEII  960
ESSKIKARTM VDAAVQAMLS LTDRDNTTEK IEEAIGFVND RIPLDDSCMP TQPTDPKSKN  1020
MSDKNEAEIP SELITKCVAT LLMIQKCSER QFPPADVAKV LDSAVASLQP CCSQNFPIYA  1080
EIQQCMGIIR NQILALVPM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-115HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434966.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X1
RefseqXP_016434967.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X1
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLK4AX040.0K4AX04_SOLLC; Uncharacterized protein
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding